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accession-icon GSE44035
Gene expression from human pancreatic islet
  • organism-icon Homo sapiens
  • sample-icon 10 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Gene 1.0 ST Array (hugene10st)

Description

Expression profiling of cell cycle genes in human pancreatic islets with and without type 2 diabetes

Publication Title

Autoimmunity against INS-IGF2 protein expressed in human pancreatic islets.

Sample Metadata Fields

Sex, Age, Specimen part

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accession-icon GSE54279
Expression microarray analysis of human pancreatic islets reveals CD59 function
  • organism-icon Homo sapiens
  • sample-icon 128 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Gene 1.0 ST Array (hugene10st)

Description

Pancreatic islets are central in type 2-diabetes development, which coincides with increased activity of innate immunity. Intriguingly, human pancreatic islets express many complement genes. The most highly expressed gene was the complement inhibitor CD59 that is GPI anchored to the cell membrane, which unexpectedly was found in high amounts intracellularly in beta cells. Silencing of CD59 strongly suppressed insulin secretion. Importantly, this suppression was unrelated to established CD59 functions, but rather depletion of intracellular CD59. Imaging experiments identified a distal site of inhibition in the exocytotic pathway, but prior to emptying of the insulin granules. Proximity Ligation Assays pin-pointed the mechanism to impaired turnover of exocytosis-regulating SNARE-proteins and CD59 was detected in complex with VAMP2 and syntaxin. CD59 was downregulated by 24-h glucose incubations in human islets, rat cell lines and in islets from three rodent diabetes models.

Publication Title

The complement inhibitor CD59 regulates insulin secretion by modulating exocytotic events.

Sample Metadata Fields

Specimen part

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accession-icon GSE50398
Global transcriptomic analysis of human pancreatic islets reveals novel genes influencing glucose metabolism
  • organism-icon Homo sapiens
  • sample-icon 89 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Gene 1.0 ST Array (hugene10st)

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

TCF7L2 is a master regulator of insulin production and processing.

Sample Metadata Fields

Sex, Age, Specimen part

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accession-icon GSE50397
Global transcriptomic analysis of human pancreatic islets reveals novel genes influencing glucose metabolism [expression array]
  • organism-icon Homo sapiens
  • sample-icon 89 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Gene 1.0 ST Array (hugene10st)

Description

Here we harnessed the potential of expression arrays in 89 human pancreatic islet donors (different levels of blood glucose (HbA1c)) to identify genes regulated in this relevant tissue for type 2 diabetes (T2D).

Publication Title

TCF7L2 is a master regulator of insulin production and processing.

Sample Metadata Fields

Sex, Age, Specimen part

View Samples
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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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